MmuEX6102184 @ mm10
Exon Skipping
Gene
ENSMUSG00000008226 | Scrn3
Description
secernin 3 [Source:MGI Symbol;Acc:MGI:1921866]
Coordinates
chr2:73312601-73318427:+
Coord C1 exon
chr2:73312601-73312713
Coord A exon
chr2:73315432-73315592
Coord C2 exon
chr2:73318246-73318427
Length
161 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTTTTTTTTTTAAGAAA
3' ss Score
8.69
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAGGATGACTACTTCCGTGGTTTGACGCTTGGCACCGCCCCTCTTGCTCTCTTCCGGCAGTCGCTTCTGGTGGCTGCCGCGGCTTTGGCGGCGTCCGCGCGTGCGCAGCAGAG
Seq A exon
AAATGGAACCCTATTCCTGTGACACTTTTGTGGCATTACCTCCAGCAACAGTAGGAAATAGGGTTATTTTTGGAAAAAATTCAGACAGACTCTTTGATGAAGTACAAGAAGTAATTTACTGTCCAGCTGCAGTTCATAATGATTTGGAAAAACGTCTCAAG
Seq C2 exon
TGTACTTATATAGAAGTTGATCAAGTTCCTGAAACATATGCTGTTGTCCTTAGTCGCCCAGCTTGGCTGTGGGGGGCAGAAATGGGTGCCAATGAGCATGGAGTCTGCATTGGGAATGAGGCTGTATGGGGAAGAGAAGACATTTCTAAGGAGGAAGCACTTTTGGGCATGGACCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008226-'0-8,'0-3,6-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0357710=Peptidase_C69=PU(12.8=60.4)
C2:
PF0357710=Peptidase_C69=FE(24.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACTTCCGTGGTTTGACGC
R:
TCTCTTCCCCATACAGCCTCA
Band lengths:
243-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types