BtaEX0031620 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012966 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:HGNC:30382]
Coordinates
chr2:22426719-22432815:-
Coord C1 exon
chr2:22432742-22432815
Coord A exon
chr2:22429502-22429671
Coord C2 exon
chr2:22426719-22426900
Length
170 bp
Sequences
Splice sites
3' ss Seq
AACTTCCATATGATTTTTAGTTA
3' ss Score
3.35
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
CGACTTCCGGCAACTAGCTCCTCTCCACCCTTTCTCACTCCTTTCCCCTTTCACTTGGGTAGCTCGGAGGCCAG
Seq A exon
TTAAAAAAAAAATGGAACCTTGTTCCTGTGACACTTTCGTGGCATTACCTCCAGCAACAATTGATAACAGGATTATTTTTGGGAAAAATTCAGATAGACCCTGTGATGAAGTACAAGAAGTCGTTTATTTTCCTGCTGCAGTTCATGACAACCTGAAGGAACATCTTAAG
Seq C2 exon
TGTACTTACATAGAAATTGATCAAGTTCCTGAAACATACGCCGTTGTCCTTAGTCGCCCAGCTTGGTTATGGGGAGCAGAAATGGGAGCCAATGAGCATGGAGTTTGCATTGGGAATGAAGCTGTATGGGGAAGAGAAAAAGTTTGTGATGAAGAGGCACTACTGGGCATGGACCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012966-'0-4,'0-2,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0357710=Peptidase_C69=PU(18.0=90.6)
C2:
PF0357710=Peptidase_C69=PU(26.6=93.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTAGCTCCTCTCCACCCT
R:
TGACAAGGTCCATGCCCAGTA
Band lengths:
245-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development