DreEX6034833 @ danRer10
Exon Skipping
Gene
ENSDARG00000042467 | tlk1a
Description
tousled-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-071008-2]
Coordinates
chr9:3611892-3614587:+
Coord C1 exon
chr9:3611892-3611967
Coord A exon
chr9:3613126-3613169
Coord C2 exon
chr9:3614492-3614587
Length
44 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTTTCCTTCTCATAGGGA
3' ss Score
10.86
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACTCCCGAAAAGAAGCACTCGGAATCGTCACGGGGCAGGAAGAGGAAAGCTGACATCCAATCAGAGAGCAGTCAGG
Seq A exon
GGAAGTCTGTCATCCGGGGACCCAAAATTAGCGATTATTTTGAT
Seq C2 exon
TTTCACGGCGGTAACGGCTCCAGTCCAGTAAGAGGTCTACCGCCGGTCATCCGTTCTCCCCAGAACTCACATTCCCATTCTGCGCCAGGATCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042467-'17-9,'17-7,18-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.933 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAAAAGAAGCACTCGGAA
R:
TTCTGGGGAGAACGGATGACC
Band lengths:
138-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]