GgaEX1058689 @ galGal3
Exon Skipping
Gene
ENSGALG00000009569 | F1P396_CHICK
Description
NA
Coordinates
chr7:19582280-19585394:+
Coord C1 exon
chr7:19582280-19582355
Coord A exon
chr7:19584813-19584859
Coord C2 exon
chr7:19585308-19585394
Length
47 bp
Sequences
Splice sites
3' ss Seq
TTATAATGTATATGTTTCAGGAA
3' ss Score
8.71
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ACTCCAGAGAAGAAACAGTCAGAACCTTCCAGAGGAAGAAAAAGAAAAGCAGACACTCAGAGTGAAAGCAGCCAAG
Seq A exon
GAAAGAGTATTGGGGGACGTGGCCACAAGATTAGTGACTATTTTGAG
Seq C2 exon
TACCAAGGTGGAAACGGCTCTAGTCCAGTTCGAGGTGTACCTCCTGCAATCCGATCTCCTCAGAATTCACATTCCGCCCCTTCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009569-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACAGTCAGAACCTTCCAGA
R:
AGGGGCGGAATGTGAATTCTG
Band lengths:
147-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]