HsaEX0065116 @ hg19
Exon Skipping
Gene
ENSG00000198586 | TLK1
Description
tousled-like kinase 1 [Source:HGNC Symbol;Acc:11841]
Coordinates
chr2:171912981-171917666:-
Coord C1 exon
chr2:171917591-171917666
Coord A exon
chr2:171914661-171914707
Coord C2 exon
chr2:171912981-171913076
Length
47 bp
Sequences
Splice sites
3' ss Seq
ATGCGCTTCTTATATTTTAGGAA
3' ss Score
10.56
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ACACCGGAGAAGAAACAATCGGAATCATCCAGGGGAAGAAAGAGAAAAGCAGAAAACCAGAATGAAAGTAGTCAGG
Seq A exon
GAAAAAGTATTGGGGGACGTGGCCACAAAATTAGCGACTATTTTGAA
Seq C2 exon
TACCAGGGTGGAAATGGCTCAAGTCCAGTAAGAGGCATACCTCCTGCAATCCGTTCTCCTCAAAATTCACATTCACATTCCACTCCTTCCTCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198586_MULTIEX3-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.969 C2=0.988
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCGGAGAAGAAACAATCGG
R:
TGAGGAGAACGGATTGCAGGA
Band lengths:
138-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)