DreEX6035423 @ danRer10
Exon Skipping
Gene
ENSDARG00000074143 | myo10l3
Description
myosin X-like 3 [Source:ZFIN;Acc:ZDB-GENE-070912-237]
Coordinates
chr9:12781010-12781987:-
Coord C1 exon
chr9:12781849-12781987
Coord A exon
chr9:12781237-12781321
Coord C2 exon
chr9:12781010-12781116
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCTTTAACATTTGTCTCCAGAAT
3' ss Score
8.07
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CCCAATAATGGAGGCTTTTGGAAATGCAAAAACAGTTTACAACAACAACTCCAGTCGCTTCGGAAAGTTCATTCAACTTCACTTCTCCCAGAGTGGAAATATCCAGGGTGGCTGTATTATTGATTATTTGCTTGAAAAG
Seq A exon
AATCGAGTTGTGCGACAAAATCCAGGAGAAAGAAACTATCATATTTTCTATGCCTTGTTGTCAGGTGCCAAGTATGAACACAGAG
Seq C2 exon
AAATGTATGTGCTAGCTGACTCTCCTGAAGCTTATCATTACCTCAACCAGTCCGGCTGTGTAAAAGACAGAAGCCTAGATGACAAACACCTCTATGATAGTGTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074143-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.9=100)
A:
PF0006316=Myosin_head=FE(4.2=100)
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAACTCCAGTCGCTTCG
R:
TGTCTTTTACACAGCCGGACT
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]