DreEX6035896 @ danRer10
Exon Skipping
Gene
ENSDARG00000069934 | parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:ZFIN;Acc:ZDB-GENE-070912-387]
Coordinates
chr9:20672982-20673893:+
Coord C1 exon
chr9:20672982-20673106
Coord A exon
chr9:20673372-20673511
Coord C2 exon
chr9:20673698-20673893
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTCTTCTTGTTCAGACA
3' ss Score
9.37
5' ss Seq
GAGGTTCAT
5' ss Score
1.75
Exon sequences
Seq C1 exon
CTGTATTTCAGGAAGCATTTCTTTACTGAACTTCACACACCAAATCATTCGTGTCTGCTATCTGTACATATTGCTATATATTCCTAAAATCTTAACGTGTCACAGCTCGTCTAACTTCGTAGACA
Seq A exon
ACACTGACAGCATCATGACAGTGTTTGAAAACTGTACTGTTGTGTTTGATGTGAAGAATGTGCCTTTTAAAGAGAAGCAGAAGCTGAAATCAGCTCTTCTGGAGAATGGAGGAAACATCTCCTACACCATCAACAAAGAG
Seq C2 exon
TGCTCTTTTGTGGTCACCAGCAGTGTGAATGACCTGAGCAGTAACAGGCAGCGCAGCATCCAGAAGCTCCAGATCCCGGTGGTTGGAACGCAGTATGTGTGGAGTTGTGTGGATGAAGGACATCTTCTGCCTTTGACGGAGCATAATTTAACCCCACAGCTGTCATATCCAACCAATGAATCCCTCCCTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069934-'1-2,'1-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
PF0053321=BRCT=PU(53.1=89.6)
C2:
PF0053321=BRCT=PD(45.7=56.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAATCATTCGTGTCTGCT
R:
TGGATATGACAGCTGTGGGGT
Band lengths:
258-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]