RnoEX0001693 @ rn6
Exon Skipping
Gene
ENSRNOG00000051196 | AABR07018038.1
Description
NA
Coordinates
chr15:36809361-36822301:+
Coord C1 exon
chr15:36809361-36809470
Coord A exon
chr15:36819887-36820019
Coord C2 exon
chr15:36822106-36822301
Length
133 bp
Sequences
Splice sites
3' ss Seq
ATTATCTTTTTTTCTTTCAGGAT
3' ss Score
12.64
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
CCTGACGCGCCCCACCTCTCCCGGAAGCACAGAGGCTGGAACGCTGGCTGTGGGGCTCCGAGGAAAGGATCATCCGACCCCAGGAAGGGCCAGGAGGGATCTCCAAGCAG
Seq A exon
GATGACTTTGGGCATCTTTGCAAATTGTATATTCTGCTTAAAAGTCAAGTACTTACCTCGTCAGCAGAAGAAAAAGCTGCAAACTGATATTAAGGAAAATGGCGGAAAGTTTTCCTTTTTATTAAACCCTCAG
Seq C2 exon
TGCACACACGTCATCGTTGACAGTGCTGACGTCCTGAGCCGGTGTCATCTGAACTCCATCCAGAAGAACGATGTCCAGATAGCAAACCCAGCCTTCATCGAGGACTCGGTCAGACAGCGCAGACTCCTGGATGTGAAGAATTACGATCCCATGTCGCCGGCTGGGGCAGCGCCTCCAGCTGAAAAGATCAGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051196-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.068 C2=0.227
Domain overlap (PFAM):
C1:
NA
A:
PF0053321=BRCT=PU(53.1=97.7)
C2:
PF0053321=BRCT=PD(44.4=54.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCACAGAGGCTGGAAC
R:
CGGCGACATGGGATCGTAATT
Band lengths:
247-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]