GgaEX6006373 @ galGal3
Exon Skipping
Gene
ENSGALG00000017146 | PARP4
Description
NA
Coordinates
chr1:183587923-183591146:-
Coord C1 exon
chr1:183590894-183591146
Coord A exon
chr1:183589635-183589767
Coord C2 exon
chr1:183587923-183588069
Length
133 bp
Sequences
Splice sites
3' ss Seq
CCCCCTTTCTGTTTTAACAGGAG
3' ss Score
11.28
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TGCACTTTAACAGTGAGTTTCCTCCTCCCTCAAGCACCGGAAGTGTTAGTGTTCCTTATTCCGCAGCAGACTGCACGTCACTTGGTTTATTTATTTCTCAGGGTCGCAACTGCTGCCGCTGTCCCTCTGGGCGATGTACAGGGGGGTGTGAGCTGTCCCACCCCATCCTCCCTCCCTGTGCCCAGGCTCTTCAGTTGCACCTCGCTCTGCTGAGGACGCAGAAGGTCCTTCAGGCAGGGAGCTGCCTGAGCGG
Seq A exon
GAGAGCAATGACAATCTTTGCAAACTGTGTGTTCTTTATTAAACTGAAGTACTCATCCATTCAGAAGAAGAACAGCCTGAAAGCATGTATAGAAGAAAATGGTGGAGCAATTGATTTTGTGCTTAATAACAAA
Seq C2 exon
TGTACACATGTTCTTGTGGATAATGCCAATGTCCTCAGTCATCACAATCTAAAAATTACTCAGAAATATCAGCTGCCTGTTTTATATGCAGATTTTGTCTGGAAATCAGTTGAAAATGGGAAGCTTTTAGTAACTGATGCATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017146-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0053321=BRCT=PU(53.1=97.7)
C2:
PF0053321=BRCT=PD(44.4=73.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTTCCTTATTCCGCAGCA
R:
GTGATGACTGAGGACATTGGCA
Band lengths:
251-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]