MmuEX6041776 @ mm10
Exon Skipping
Gene
ENSMUSG00000054509 | Parp4
Description
poly (ADP-ribose) polymerase family, member 4 [Source:MGI Symbol;Acc:MGI:2685589]
Coordinates
chr14:56575619-56585752:+
Coord C1 exon
chr14:56575619-56575730
Coord A exon
chr14:56584159-56584291
Coord C2 exon
chr14:56585557-56585752
Length
133 bp
Sequences
Splice sites
3' ss Seq
ACTATTTTTTTTTCTTTCAGGAT
3' ss Score
11.96
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACCTAACCCGGCTGCGCCTGGAGCGGAAGCACCAAGGCTGGAACGCTGGCTGCGGAGCACGGAGGAGGGGACCATCCGACACCAGGAAGGGCCAGGCGGGATCTCCGAGCAG
Seq A exon
GATGACTTTAGGAATCTTTGCAAATTGTATATTCTGCTTGAAGGTCAAGTACTTACCTCGTCAGCAGAAGAAAAAGCTGCAAACTGATATTAAGGAAAATGGCGGAAAGTTTTCCTTTTTATTAAACCCTCAG
Seq C2 exon
TGCACACATGTCATCGTAGACAGTGCTGACGTCCTGAGTCGGTGTCATCTGAACTCCATCCAAAAGAACGATGTGCAGATTGCCAACCCAGCATTCATCCAGGACTCTGTGAGACAGAGGAGACTCCTGGATGTGAGGAATTATGATCCTCTGTCGCCGGCTCCAGCAGCACCACCAGCTGAAAGGAGCAGGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054509-'0-6,'0-4,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.068 C2=0.247
Domain overlap (PFAM):
C1:
NA
A:
PF0053321=BRCT=PU(53.1=97.7)
C2:
PF0053321=BRCT=PD(44.4=54.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCACCAAGGCTGGAAC
R:
CCGGCGACAGAGGATCATAAT
Band lengths:
248-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types