DreEX6036117 @ danRer10
Exon Skipping
Gene
ENSDARG00000062650 | rif1
Description
replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
Coordinates
chr9:22970150-22975554:+
Coord C1 exon
chr9:22970150-22970267
Coord A exon
chr9:22971146-22971267
Coord C2 exon
chr9:22975476-22975554
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTACTTTGGTATGTTTTCAGGTT
3' ss Score
9.25
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AGCGTAGTCGAGAACATTTAGCAGCACTTTACGCTATAAACTCCTCCGATTCCTCTGATATAGTTTGAGTTTTGATGAAATCGCCTTCAGAGCCTGTCAGCGAGTCCTCAGTCGCGAG
Seq A exon
GTTGTGAGGATGATGGCGGCAGTGCCTTTATCCAGTACCAGCCTCCTTCCTCTTCTGGAGTGTTTGGAAGATGAATCAGCTGGGCTTTCAGCGCAGACGGATGCCTACATCACCATTGCAAA
Seq C2 exon
CCGACTTAATGGAGAAGAAGGACGCCAGTTTCTGCCTGTGGTTGTTAAGCATTTTGCACGTCTTAGTAAAGTGCTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062650-'0-6,'0-1,2-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF122313=Rif1_N=PU(5.0=47.4)
C2:
PF122313=Rif1_N=FE(6.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTAGTCGAGAACATTTAGCA
R:
AAGCACTTTACTAAGACGTGCA
Band lengths:
194-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]