DreEX6036425 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25168961-25171611:-
Coord C1 exon
chr9:25171421-25171611
Coord A exon
chr9:25169537-25169670
Coord C2 exon
chr9:25168961-25169296
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCTGTTCTGTTCAGGTG
3' ss Score
10.93
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
TGTTGCTGGAGAATGTTGGGGAAGAACTGGACCCCATACTCGAGCCCCTGCTGCTGAAACAAACTTTTAAACAGGGTGGCAGTGTCTGCATTCGGCTGGGTGACTCCACTATTGAATATGCACCAGATTTCCGCTTTTATATAACAACTAAGTTACGAAATCCACATTATCTACCTGAGGTCTCCGTCAAG
Seq A exon
GTGACCCTGCTGAACTTCATGATCACCCCAGAGGGGATGCAGGACCAGCTGCTGGGCATTGTGGTGGCCAGAGAGAGACCTGACCTTGAGGAGGAGAAACAAGCCCTCATCGTACAGGGAGCTGAGAACAAGAG
Seq C2 exon
ACAGTTGCAGGAAATAGAGGATAAAATCCTAGAAGTCCTCTCTGCCTCAGAGGGCAATATTTTAGAAGATGAGACGGCTGTCCAGATCCTCTCTTCTTCTAAAGTTCTAGCCAATGAGATCTCTGAGAAACAAGCAATTGCTGAGGTTACTGAGCTGAAGATTGACCAGACACGCTTGGGCTACACTCCCATCGCCATCCACTCTGCAATTTTGTTTTTCTCCATTGCTGACTTGGCCAACATTGAGCCCATGTATCAGTACTCTCTAACCTGGTTCATCAATCTCTTCATCATGTCCATTGATAATTCCCAAAAAAGTGACCTTCTAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'49-50,'49-49,51-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(27.4=100)
A:
PF127812=AAA_9=FE(19.1=100)
C2:
PF127812=AAA_9=PD(17.8=36.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAAGAACTGGACCCCATA
R:
TGGACAGCCGTCTCATCTTCT
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]