BtaEX0011616 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84827461-84832912:-
Coord C1 exon
chr2:84832722-84832912
Coord A exon
chr2:84828531-84828664
Coord C2 exon
chr2:84827461-84827796
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTGTTTACTCTCATTTACAGGTG
3' ss Score
11.56
5' ss Seq
AAGGTTTTA
5' ss Score
0.84
Exon sequences
Seq C1 exon
TGTTGCTAGAAAATGTGGGAGAAGAACTGGATCCGATCCTGGAACCTCTTCTACTAAAACAGACCTTTAAGCAGGGTGGAAGTACATGCATACGACTTGGGGACTCTACCATTGAATATTCACCAGACTTCCGCTTTTATATTACTACCAAGCTAAGAAATCCTCATTATCTTCCTGAAACTTCAGTAAAG
Seq A exon
GTGACACTGTTAAACTTCATGATCACTTCTGAGGGGATGCAGGATCAGCTTTTGGGAATTGTGGTAGCACGAGAAAGGCCAGATCTTGAAGAAGAAAAGCAAGCCTTAATATTACAAGGAGCTGAAAACAAAAG
Seq C2 exon
GCAGTTAAAAGAAATAGAAGACAAGATTTTAGAAGTTCTTTCATCTTCGGAAGGCAATATATTAGAAGATGAAACTGCCATTAAGATATTATCTTCCTCCAAGGCTTTGGCTAATGAGATTTCTCAAAAGCAGGAAGTAGCCGAAGAGACAGAGAAGAAGATTGACAGCACCCGCATGGGCTATCGACCTATTGCCGTTCATTCCACCATCCTGTTTTTTTCTATTGCTGATTTAGCAAACATCGAGCCCATGTACCAATACTCACTGACCTGGTTTATTAACCTTTTCATCCTGTCTATTGAAAATTCAGAGAAGTCAGAAATTTTGTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'52-57,'52-56,53-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.027
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(27.3=100)
A:
PF127812=AAA_9=FE(19.0=100)
C2:
PF127812=AAA_9=PD(17.7=36.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATACGACTTGGGGACTCT
R:
TCTCTTCGGCTACTTCCTGCT
Band lengths:
254-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development