MmuEX0015029 @ mm10
Exon Skipping
Gene
ENSMUSG00000041144 | Dnah7b
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46276961-46298374:+
Coord C1 exon
chr1:46276961-46277151
Coord A exon
chr1:46289533-46289666
Coord C2 exon
chr1:46298248-46298374
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATATATTCTTTTACTTATAGGTC
3' ss Score
8.99
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
TGTTGCTAGAAAATGTGGGAGAAGAACTGGACCCAATTCTAGAGCCTCTTTTGTTGAAGCAGACCTTCAAGCAGGGTGGGAGCACATGCATTCGGCTTGGAGACTCCACAATTGAGTATGCTCCCGACTTCCGCTTCTACATCACAACCAAGCTGAGGAACCCGCACTATCTCCCAGAGACGTCAGTGAAG
Seq A exon
GTCACATTGTTAAACTTCATGATAACTCCTGAGGGAATGCAGGATCAACTTTTGGGAATCGTAGTGGCAAGGGAAAGGCCAGACCTCGAAGAAGAAAAGCAATCCTTGATAGTACAAGGAGCTGACAACAAAAG
Seq C2 exon
GCTTCAGATTCTCAGAGATCACTTCACCTACTCACTCTATGTCAACATCTGCCGCTCGCTCTTCGAAAAGGACAAGTTGCTGTTTTCATTTTGTCTCACTGTGAATCTGCTGATACATGAGAACGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144_MULTIEX5-1/4=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(27.3=100)
A:
PF127812=AAA_9=FE(19.0=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGAAGAACTGGACCCAA
R:
ACTTGTCCTTTTCGAAGAGCG
Band lengths:
253-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types