GgaEX6041830 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9200470-9204791:-
Coord C1 exon
chr7:9204601-9204791
Coord A exon
chr7:9201505-9201638
Coord C2 exon
chr7:9200470-9200805
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATACATTTTCCTTCTATCAGGTA
3' ss Score
8.9
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
TGCTTCTTGAGAATATTGGAGAAGAACTGGATCCTATTCTAGAGCCACTCTTGCTCAAACAGACATTTAAGCAGTCAGGAAGTATATGCATTTGCCTCGGCGACTCCACTATTGAGTATGCTCCCGAATTCCGCTTTTATATCACTACTAAGCTGAGAAATCCACATTATCTTCCTGAAATATCAGTCAAG
Seq A exon
GTAACATTATTGAATTTCATGATAACTCCAGAAGGAATGCAGGATCAGCTTCTTGGAATAGTAGTTGCAAGAGAAAGACCAGATCTTGAAGGAGAAAAACAAGCCCTCATCCTTCAAGGGGCTGCGAATAAAAG
Seq C2 exon
GCAACTAAAAGAAATAGAAGACAAGATTTTAGAAGTTCTTTCGGCTTCAGAAGGAAATATTTTGGAGGATGAAACTGCTATTAAGATATTGTCTTCTTCCAAAGTTCTGGCTAATGAGATTTCTGAAAAGCAAGCTGTAGCTGAAGAAACAGAAAAGAAGATTGATGCCACTCGTATGGGCTATCGTCCTATCTCTGTCCATTCATCAATCTTGTTTTTTTCTATTACTGATCTAGCCAACATTGAGCCTATGTATCAGTACTCTCTCATGTGGTTTATTAACCTTTTCATCATGTCTATAGATAACTCAGAGAAATCAGAAGATTTACAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'59-65,'59-64,61-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(27.3=100)
A:
PF127812=AAA_9=FE(19.0=100)
C2:
PF127812=AAA_9=PD(17.7=36.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTCCCGAATTCCGCTTTT
R:
TAGCCCATACGAGTGGCATCA
Band lengths:
257-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]