DreEX6037428 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36762059-36764953:+
Coord C1 exon
chr9:36762059-36762178
Coord A exon
chr9:36762518-36762631
Coord C2 exon
chr9:36764804-36764953
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATGAAGTGTCTCTGTTTCAGATG
3' ss Score
9.06
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
Exon sequences
Seq C1 exon
ACAACAGGAGCTGCAGAAAAGGTCATCGTCCCTGCTATAACAGGCGTTGTGTGGCCAACAGTCGATTTTGTGATGGAATCGACGACTGTGGCGACAACTCAGATGAGGCGTTTTGTAACA
Seq A exon
ATGTCACGTGTGCTGCATCTGAGTCATCCTGTCAAGATGGAACTTGCATACCAATATCCTCCTGGTGCAACCAGGTCATCGACTGTGCCGATGCCTCGGATGAAAAGAACTGCA
Seq C2 exon
ATCACACAGACTGCACAGACTTTTACAGGATAGGAGTTGCAGAAAAGGTCTTCGTCAGCTGCAACACTACATCGCTCTGCGTTCACCATTCCTGGCTATGTGACGGAGCCAACGACTGCGGAGATTACGCCGATGAGAGAAACTGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'47-47,'47-46,48-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.5)
A:
PF0005713=Ldl_recept_a=WD(100=97.4)
C2:
PF0005713=Ldl_recept_a=WD(100=70.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGCTGCAGAAAAGGTC
R:
CGTAATCTCCGCAGTCGTTGG
Band lengths:
246-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]