HsaEX0036412 @ hg19
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:6693]
Coordinates
chr2:141283413-141291709:-
Coord C1 exon
chr2:141291590-141291709
Coord A exon
chr2:141283806-141283919
Coord C2 exon
chr2:141283413-141283562
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTATGTACCTGTTTTTCTAGTTT
3' ss Score
7.16
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
Exon sequences
Seq C1 exon
AAAACAGAAGCTGTCGAAGAGGCTTCAAGCCATGCTATAATCGCCGCTGCATTCCTCATGGCAAGTTATGTGATGGAGAAAATGACTGCGGAGACAACTCTGATGAATTAGATTGTAAAG
Seq A exon
TTTCAACCTGTGCCACGGTTGAGTTCCGCTGTGCAGATGGGACTTGTATTCCAAGATCAGCACGATGCAACCAGAACATAGATTGTGCAGATGCTTCAGATGAAAAGAACTGCA
Seq C2 exon
ATAACACAGACTGCACACATTTCTATAAGCTTGGAGTGAAAACCACAGGGTTCATAAGATGTAATTCTACCTCACTGTGTGTTCTGCCAACCTGGATATGCGACGGGTCTAATGACTGTGGAGACTATTCAGATGAATTAAAGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702-'48-48,'48-47,49-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.2)
A:
PF0005713=Ldl_recept_a=WD(100=94.9)
C2:
PF0005713=Ldl_recept_a=WD(100=68.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAAGCTGTCGAAGAGGC
R:
TCTCCACAGTCATTAGACCCGT
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)