MmuEX6101051 @ mm10
Exon Skipping
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:40902977-40919255:-
Coord C1 exon
chr2:40919136-40919255
Coord A exon
chr2:40903366-40903479
Coord C2 exon
chr2:40902977-40903126
Length
114 bp
Sequences
Splice sites
3' ss Seq
CTTTACTGTGTTCTTTACAGTGT
3' ss Score
9.95
5' ss Seq
GCAGTAAGA
5' ss Score
4.95
Exon sequences
Seq C1 exon
AAAACCGAAGTTGCCGAAGTGGGTTTAAACCGTGCTACAATCGTCGCTGTGTTCCTCATGGCAAACTGTGCGATGGTACAAATGATTGTGGGGACAGCTCTGATGAGTTGGATTGTAAAG
Seq A exon
TGTCTACCTGCTCCACAGTTGAGTTCCGCTGTGCAGATGGGACTTGCATTCCAAGATCAGCACGGTGCAACCAAAACATGGACTGTTCAGATGCTTCAGATGAAAAGGGTTGCA
Seq C2 exon
ATAATACAGATTGCACACATTTCTACAAACTTGGAGTGAAATCCACAGGATTCATTAGGTGTAACTCTACCTCACTGTGTGTTCTACCAAGCTGGATATGTGATGGATCTAATGACTGTGGAGACTATTCTGATGAATTAAAGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-'75-73,'75-72,76-73=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.2)
A:
PF0005713=Ldl_recept_a=WD(100=94.9)
C2:
PF0005713=Ldl_recept_a=WD(100=70.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCGAAGTTGCCGAAGTGG
R:
AGTCTCCACAGTCATTAGATCCA
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types