DreEX6037438 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36717414-36724252:+
Coord C1 exon
chr9:36717414-36717539
Coord A exon
chr9:36717664-36717795
Coord C2 exon
chr9:36724118-36724252
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTCTTGCTGTCCCAGGCC
3' ss Score
9.76
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTAGAAATGCCTGTCAGTTAAACAACGGCGGCTGCTCTCAGCTCTGTCTGCCCACATCAGAAAATACTCGAACCTGCGCCTGCACCATCGGATACAACTTGCGCAACGACCGGCTCTCCTGTGAAG
Seq A exon
GCCTGAACTCTTTCCTGATGTACTCTTTTCACGAGGGGATTCGTGGCATCGCTTTGGACCCCAATGACCATACCGAGACCCTGATGCCCATCAGCGGCACCTTGTTTGCAGTTGGTGTGGACTTTCATGCAG
Seq C2 exon
GAAATGATACAGTTTACTGGACAGACATGGGTTTAAACCGGATCTCCAGAGCCAAGAGGGATCAGACGTGGAGGGAAGACATTATCACCACTGGCATCAACAGAGTGGAGGGCATCGCAGTTGATTGGATTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'32-34,'32-33,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=88.1)
A:
NO
C2:
PF0005812=Ldl_recept_b=WD(100=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTCAGTTAAACAACGGC
R:
ATCCAATCAACTGCGATGCCC
Band lengths:
248-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]