GgaEX0018754 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33596011-33600162:-
Coord C1 exon
chr7:33600037-33600162
Coord A exon
chr7:33598269-33598400
Coord C2 exon
chr7:33596011-33596145
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTATTTGATTTTTCCCTTAGGTA
3' ss Score
10.42
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTAGCAATTCCTGTCAATTCAATAATGGTGGATGTTCCCAGCTCTGTTTACCAACATCAGAAAGTACAAGAACCTGTGTTTGTACAGTAGGCTACAACCTCCAAAAAAACCGCATGGCATGCAAAG
Seq A exon
GTATAGAATCATTTATTATGTATTCTGTTCATGAAGGGATTAGAGGAATTTCTCTTGATCCAAATGATAAAATGGAAGCTTTAATGCCTGTATCTGGAACCTCATTTGCAGTGGGCATAGACTTCCATGCAG
Seq C2 exon
GTAATGATACAATCTATTGGACAGACATGGGTTTCAACAAAATTAGCAGATCTAAACGGGACCAAACATGGAAAGAAGATGTTGTTACAAATGGCTTGGGAAGAGTTGAAGGCATTGCAGTGGATTGGATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'52-61,'52-59,53-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
NO
C2:
PF0005812=Ldl_recept_b=WD(100=89.1),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATAATGGTGGATGTTCCCAG
R:
CTGCAATCCAATCCACTGCAA
Band lengths:
243-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]