DreEX6037441 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36697597-36714288:+
Coord C1 exon
chr9:36697597-36697691
Coord A exon
chr9:36698941-36699090
Coord C2 exon
chr9:36714148-36714288
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTTCTCATTTCCCCCTGTAGGAC
3' ss Score
12.24
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
AAAAATCTACTGGACCGATGGCAATACAATAAACGTAGCCAACATGGATGGAAGCAACAGGAAGGTTCTTCATCAGAACCAGAAGGAACCAGTTG
Seq A exon
GACTTTCGATTGACTTTCCAGCTGGGAAAATGTATTGGATCAGTTCCGCTAATGGCACTATCAACAGGTGCAATCTGGACGGCAGTGGCTTTGAGGTCATTGAAAGCATGAAGAGGGACTTAACTAAAGCCACGGCTCTTGCAGTCATGG
Seq C2 exon
GTGGTAAGCTATGGTGGGCTGATGATGATCTGGCTCAGTTGGGGACGGTTGCCAAACGGGACGGACGAAACCCAGTGGTGCTGCGCAATAAGACCAGCGGATTGGTGCACATGAAGGTTTATGACCGAGATGGTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'29-31,'29-30,30-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(79.5=96.9)
A:
PF0005812=Ldl_recept_b=PD(15.4=12.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTACTGGACCGATGGCA
R:
CCATCTCGGTCATAAACCTTCATGT
Band lengths:
226-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]