RnoEX0002998 @ rn6
Exon Skipping
Gene
ENSRNOG00000030243 | AABR07051892.1
Description
NA
Coordinates
chr3:25820933-25904255:-
Coord C1 exon
chr3:25904155-25904255
Coord A exon
chr3:25875450-25875599
Coord C2 exon
chr3:25820933-25821033
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTCGTTTAATTACAGGTC
3' ss Score
7.69
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATTAAGGAAACTCTACTGGACAGATGGGAACACGATAAACATGGCCAATATGGATGGCAGTAACAGCAAGATTCTCTTTCAGAACCAAAAGGAACCAGTTG
Seq A exon
GTCTATCGATAGACTATGTGGAAAATAAGCTTTATTGGATCAGTTCTGGAAATGGAACCATAAACCGATGCAACCTAGATGGTGGTAATTTAGAAGTAATAGAGTCAATGAAGGAAGAATTAACAAAAGCGACGGCCTTAACCATCATGG
Seq C2 exon
ATAAGAAACTCTGGTGGGCAGACCAAAACTTAGCTCAACTGGGCACTTGTAACAAAAGAGATGGAAGAAATCCCAGCATCCTGAGAAATAAGACTTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030243-'30-33,'30-32,31-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAAGGAAACTCTACTGGACAGATG
R:
TCCAGAAGTCTTATTTCTCAGGATGC
Band lengths:
202-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]