GgaEX1033889 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33602408-33616522:-
Coord C1 exon
chr7:33616428-33616522
Coord A exon
chr7:33611519-33611668
Coord C2 exon
chr7:33602408-33602548
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTTGTATACATTAATTACAGGTT
3' ss Score
5.02
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TAAGCTCTATTGGACTGATGGAAACACAATTAACATGGCTAATATGGATGGCAGCAACAGCAAAATTCTCTTTCAGAATCAAAAAGATCCTGTTG
Seq A exon
GTTTATCAATAGATTATGTGGAGAACAAACTTTACTGGATCAGTTCAGGAAATGGAACCATTAATAGATGCAATCTGGATGGTGGCAATCTTGAAATAATAGACTCAATGAAAGAAGATTTACCGAAAGCCACAGCTTTAACCATAATGG
Seq C2 exon
ATAAAAAGCTTTGGTGGGCAGACCAGAATTTAGCTCAGATTGGAACCTGTAACAAACGAGATGGAAGGAACCCAACTATCCTGCGAAACAAGACTTCAGGTGTTGTGCATATGAAAGTATATGATAAAGCAGCACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'48-57,'48-55,49-57=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(84.2=97.0)
A:
PF0005812=Ldl_recept_b=PD(13.2=9.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTATTGGACTGATGGAAAC
R:
CTTGCTGTGCTGCTTTATCAT
Band lengths:
234-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]