DreEX6037447 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36662924-36675433:+
Coord C1 exon
chr9:36662924-36663121
Coord A exon
chr9:36668398-36668602
Coord C2 exon
chr9:36675269-36675433
Length
205 bp
Sequences
Splice sites
3' ss Seq
GCGAGTGGTTTGTTTTGTAGGTG
3' ss Score
6.61
5' ss Seq
GGGGTGCGT
5' ss Score
5.27
Exon sequences
Seq C1 exon
ATCCCTTTGAGGCTTTTGTGATCTTCTCCATCCGGCATGAGATTAGACGAATTGATCTTCATAAACACGACTACAGCCTGCTTGTGCCCGGCCTGCGCAACACCATTGCTCTTGACTTCCACTTCAGCCACAGTCTGCTCTACTGGACCGATGTGGTGGAGGATAAGATCTATCGGGGAAAGCTCTCAGAGACCGGAG
Seq A exon
GTGTGACCGGGGTCGAGGTCGTGATTCAGCATGGTTTGGCCACCCCGGAGGGACTCGCAGTGGATTGGATTGCAGGAAACCTCTACTGGATAGACAGCAACTTGGATCAAATTGAGGTGGCCAAGCTGAATGGGGAAATGAGAACCACTTTGATTGCCGGTGGCATGGAGCACCCGCGAGCGCTGGCTGTAGACCCGGGACAGGG
Seq C2 exon
CATTCTTTTCTGGACTGACTGGGATGCCACTTTTCCTCGGATCGAGGCGACGTCCATGAGTGGAAGTGGAAGACATGTTGTGTACAAGGACATGGAGATCGGAGCATGGCCTAATGGTCTCACCCTGGACCATCAGGAGAGGAGAATAGTGTGGACAGATGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'22-22,'22-20,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(46.7=31.8)
A:
PF0005812=Ldl_recept_b=PD(48.9=31.9),PF0005812=Ldl_recept_b=WD(100=59.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=80.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATCTTCTCCATCCGGCA
R:
CCATTAGGCCATGCTCCGATC
Band lengths:
299-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]