DreEX6037531 @ danRer10
Exon Skipping
Gene
ENSDARG00000009738 | cacnb4a
Description
calcium channel, voltage-dependent, beta 4a subunit [Source:ZFIN;Acc:ZDB-GENE-080320-2]
Coordinates
chr9:38311111-38315133:+
Coord C1 exon
chr9:38311111-38311220
Coord A exon
chr9:38314450-38314601
Coord C2 exon
chr9:38315038-38315133
Length
152 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCCTCTTTCTGACAGCGG
3' ss Score
9.17
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
AATATCAATCACTAGAGTAACTGCAGACATCTCTTTAGCCAAGAGATCTGTCCTGAATAACCCTAGTAAGAGAGCCATCATTGAGAGATCCAACACCAGATCCAACCTGG
Seq A exon
CGGAGGTTCAGAGTGAGATCGAGCGGATCTTTGAATTGGCCAGATCCCTTCAGCTGGTTGTTCTCGATGCCGACACGATCAACCATCCTGCCCAGCTCATCAAGACTTCTTTAGCTCCCATTATTGTCCATGTTAAAGTGTCTTCTCCCAAG
Seq C2 exon
GTATTACAACGGCTGATTAAATCAAGAGGAAAGTCTCAGAGCAAGCATTTAAATGTACAACTGGTGGCAGCAGACAAATTAGCTCAGTGCCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009738-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.4=100)
A:
PF0062516=Guanylate_kin=FE(27.6=100)
C2:
PF0062516=Guanylate_kin=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATCACTAGAGTAACTGCAGACA
R:
TGGAGGGCACTGAGCTAATTTG
Band lengths:
202-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]