GgaEX7011035 @ galGal4
Exon Skipping
Gene
ENSGALG00000025788 | CACNB1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:HGNC Symbol;Acc:HGNC:1401]
Coordinates
chr27:4110649-4111764:-
Coord C1 exon
chr27:4111655-4111764
Coord A exon
chr27:4110834-4110985
Coord C2 exon
chr27:4110649-4110744
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCCCCACTCTGGCAGCTG
3' ss Score
7.87
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GATCTCCATCACGCGGGTGACGGCCGACATCTCCCTCGCCAAGCGCTCTGTGCTGAACAACCCCAGCAAACACACCATCATCGAGCGCTCCAGCACACGCTCCAGCCTGG
Seq A exon
CTGAGGTGCAGAGTGAGACGGAGCGCATCTTCGAGCTGGCCCGGACCCTGCAGCTGGTGGCCTTGGACGCCGACACCATCAACCACCCGGCCCAGCTGGCCAAGACCTCCCTGGCACCCATCATCGTCTACATCAAAATCGCCTCCCCAAAG
Seq C2 exon
GTGCTGCAGCGGTTGGTGAAGTCCCGGGGCAAATCCCAGGCCAAGCACCTCAACGTGCAGATGGTGGCCTCCGACAAGCTGGCGCAGTGCCCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025788-'8-16,'8-15,10-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.4=100)
A:
PF0062516=Guanylate_kin=FE(27.6=100)
C2:
PF0062516=Guanylate_kin=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTCCATCACGCGGGTG
R:
CACTGCGCCAGCTTGTCG
Band lengths:
199-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]