DreEX0018209 @ danRer10
Exon Skipping
Gene
ENSDARG00000002167 | cacnb1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:ZFIN;Acc:ZDB-GENE-040718-399]
Coordinates
chr3:16015078-16021840:-
Coord C1 exon
chr3:16021731-16021840
Coord A exon
chr3:16015278-16015429
Coord C2 exon
chr3:16015078-16015173
Length
152 bp
Sequences
Splice sites
3' ss Seq
TAGTTTTTTTTATTTGACAGCTG
3' ss Score
6.48
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
AATATCCATCACCCGGGTGACAGCCGACATCTCACTTGCCAAACGCTCCGTCCTTAACAACCCCAGCAAACACACCATCATCGAGCGCTCCAGCACCAGATCCAGCCTGG
Seq A exon
CTGAGGTACAGAGTGAAATCGAGAGAATCTTTGAGCTGGCTCGGACGCTTCAGTTAGTGGCTCTGGATGCAGACACAATTAACCATCCATCTCAACTGGCCAAGACCTCACTGGCACCAATCATAGTCTATATCAAGATCGCCTCTCCAAAG
Seq C2 exon
GTGTTGCAGAGGCTGATAAAGTCCAGGGGAAAATCTCAGGCCAAACATCTCAATGTCCAAATGGTGGCAGCTGATAAACTGGCACAATGTCCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002167-'14-20,'14-19,17-20
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.1=100)
A:
PF0062516=Guanylate_kin=FE(27.2=100)
C2:
PF0062516=Guanylate_kin=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGTGACAGCCGACAT
R:
AGGAGGACATTGTGCCAGTTT
Band lengths:
194-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]