BtaEX6088279 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002036 | CACNB1
Description
Bos taurus calcium channel, voltage-dependent, beta 1 subunit (CACNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_175819]
Coordinates
chr19:40305921-40309556:+
Coord C1 exon
chr19:40305921-40306030
Coord A exon
chr19:40306177-40306328
Coord C2 exon
chr19:40309461-40309556
Length
152 bp
Sequences
Splice sites
3' ss Seq
CCATGACTCCACTCGCCTAGCTG
3' ss Score
1.6
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GATCTCCATCACACGTGTGACAGCGGACATTTCCCTGGCTAAGCGATCAGTCCTCAACAACCCCAGCAAACACATCATCATCGAGCGTTCCAACACACGCTCCAGCCTGG
Seq A exon
CTGAGGTTCAGAGCGAGATCGAGCGGATCTTTGAGCTAGCCCGAACCCTTCAGTTGGTTGCTCTGGACGCCGACACCATCAACCATCCAGCCCAGCTCTCCAAGACCTCACTGGCCCCCATCATTGTTTACATCAAGATCACCTCTCCTAAG
Seq C2 exon
GTTCTTCAGAGGCTCATCAAGTCTCGAGGGAAGTCTCAGTCCAAACACCTCAACGTCCAAATAGCGGCCTCAGAGAAACTGGCGCAGTGTCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002036-'12-20,'12-16,13-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.4=100)
A:
PF0062516=Guanylate_kin=FE(27.6=100)
C2:
PF0062516=Guanylate_kin=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTGTGACAGCGGACATT
R:
GGGGACACTGCGCCAGTT
Band lengths:
194-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]