GgaEX1012555 @ galGal3
Exon Skipping
Gene
ENSGALG00000012511 | B6IDG6_CHICK
Description
NA
Coordinates
chr7:36963094-36968319:-
Coord C1 exon
chr7:36968210-36968319
Coord A exon
chr7:36965706-36965857
Coord C2 exon
chr7:36963094-36963189
Length
152 bp
Sequences
Splice sites
3' ss Seq
GCCTTGTTTTCCTCCTCTAGCTG
3' ss Score
10.54
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GATATCAATAACCCGAGTGACAGCCGACATTTCTCTTGCTAAGAGGTCTGTTCTGAATAACCCAAGCAAGAGGGCAATAATTGAACGGTCAAACACACGATCCAGTTTAG
Seq A exon
CTGAAGTGCAGAGTGAGATTGAAAGAATCTTTGAGCTGGCCCGGTCCTTGCAGCTGGTTGTCCTGGATGCAGACACTATCAATCACCCCGCACAACTTATCAAGACATCTCTAGCACCAATTATTGTCCACGTTAAAGTGTCTTCTCCAAAG
Seq C2 exon
GTTTTGCAGCGACTGATTAAATCTAGAGGAAAGTCACAAAGTAAACACTTGAATGTTCAGTTGGTGGCAGCTGATAAACTTGCACAATGCCCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511-'11-14,'11-12,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.4=100)
A:
PF0062516=Guanylate_kin=FE(27.6=100)
C2:
PF0062516=Guanylate_kin=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAATAACCCGAGTGACAGCC
R:
TTGTGCAAGTTTATCAGCTGCC
Band lengths:
194-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]