RnoEX0016189 @ rn6
Exon Skipping
Gene
ENSRNOG00000007666 | Cacnb4
Description
calcium voltage-gated channel auxiliary subunit beta 4 [Source:RGD Symbol;Acc:68385]
Coordinates
chr3:37972155-37978632:-
Coord C1 exon
chr3:37978523-37978632
Coord A exon
chr3:37974044-37974195
Coord C2 exon
chr3:37972155-37972250
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTTATTGTTTCCCCCTTTAGCGG
3' ss Score
9.24
5' ss Seq
AAGGTGATC
5' ss Score
4.41
Exon sequences
Seq C1 exon
GATATCAATAACCAGAGTGACAGCTGACATTTCTCTTGCTAAGAGGTCTGTCCTCAACAATCCTAGCAAGAGAGCAATAATTGAACGTTCAAACACCAGATCCAGCCTAG
Seq A exon
CGGAAGTACAGAGTGAAATTGAAAGAATTTTCGAGTTGGCAAGATCTTTGCAATTGGTTGTTCTCGATGCAGACACCATCAATCACCCAGCACAGCTGATAAAGACATCGTTAGCGCCCATCATCGTCCACGTGAAGGTCTCGTCCCCAAAG
Seq C2 exon
GTTTTACAGCGGCTGATTAAGTCCAGAGGAAAGTCCCAGAGTAAACACTTGAATGTTCAACTGGTGGCAGCTGATAAACTGGCCCAGTGTCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007666-'16-14,'16-13,17-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.4=100)
A:
PF0062516=Guanylate_kin=FE(27.6=100)
C2:
PF0062516=Guanylate_kin=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCAATAACCAGAGTGACAGCTGA
R:
GGGACACTGGGCCAGTTTATC
Band lengths:
202-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]