BtaEX6009772 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002297 | CACNB4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:HGNC Symbol;Acc:HGNC:1404]
Coordinates
chr2:44425178-44433198:+
Coord C1 exon
chr2:44425178-44425287
Coord A exon
chr2:44430927-44431078
Coord C2 exon
chr2:44433103-44433198
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGTTATTTCTCTTCTTTTAGCGG
3' ss Score
9.8
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GATATCAATAACAAGAGTGACAGCTGACATTTCTCTTGCTAAGAGGTCTGTGCTAAATAATCCCAGCAAGAGAGCAATAATTGAACGTTCGAACACTCGGTCCAGCTTAG
Seq A exon
CGGAAGTACAAAGTGAAATTGAAAGAATCTTTGAGTTGGCAAGATCTTTGCAACTGGTTGTTCTTGATGCAGACACCATCAATCACCCAGCACAACTTATAAAGACCTCCTTAGCACCAATTATTGTTCATGTAAAAGTCTCATCTCCAAAG
Seq C2 exon
GTTTTACAGCGGTTGATTAAATCGAGAGGAAAGTCTCAAAGTAAACACTTAAATGTTCAACTGGTAGCAGCTGATAAACTTGCACAGTGCCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002297-'19-14,'19-13,20-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.4=100)
A:
PF0062516=Guanylate_kin=FE(27.6=100)
C2:
PF0062516=Guanylate_kin=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATAACAAGAGTGACAGCTGACA
R:
ACTGTGCAAGTTTATCAGCTGCT
Band lengths:
194-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]