MmuEX6101324 @ mm9
Exon Skipping
Gene
ENSMUSG00000017412 | Cacnb4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:MGI Symbol;Acc:MGI:103301]
Coordinates
chr2:52305470-52311229:-
Coord C1 exon
chr2:52311120-52311229
Coord A exon
chr2:52307389-52307540
Coord C2 exon
chr2:52305470-52305565
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTATTTGTTTCCCCTTTCAGCGG
3' ss Score
11.99
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GATATCAATAACAAGAGTGACAGCTGACATTTCTCTTGCTAAGAGATCTGTCCTCAACAATCCTAGCAAGAGAGCAATAATTGAACGTTCCAACACCAGATCCAGCTTAG
Seq A exon
CGGAAGTACAAAGTGAAATTGAAAGAATTTTTGAGTTGGCAAGATCTTTGCAATTGGTTGTTCTTGATGCAGACACCATCAACCACCCAGCACAGCTGATAAAGACATCCTTAGCACCCATCATCGTCCACGTGAAGGTCTCGTCCCCAAAG
Seq C2 exon
GTTTTACAGCGGCTGATTAAGTCCAGAGGAAAGTCCCAAAGCAAACACTTGAATGTTCAACTGGTGGCGGCCGATAAACTGGCCCAGTGCCCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017412-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.4=100)
A:
PF0062516=Guanylate_kin=FE(27.6=100)
C2:
PF0062516=Guanylate_kin=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATAACAAGAGTGACAGCTGACA
R:
CACTGGGCCAGTTTATCGGC
Band lengths:
195-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: