RnoEX6049450 @ rn6
Exon Skipping
Gene
ENSRNOG00000004518 | Cacnb1
Description
calcium voltage-gated channel auxiliary subunit beta 1 [Source:RGD Symbol;Acc:68382]
Coordinates
chr10:85958341-85962512:-
Coord C1 exon
chr10:85962403-85962512
Coord A exon
chr10:85962111-85962262
Coord C2 exon
chr10:85958341-85958436
Length
152 bp
Sequences
Splice sites
3' ss Seq
TCTCCGTCCCCATGCCCCAGCTG
3' ss Score
7.05
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GATTTCCATCACCCGGGTAACGGCTGACATTTCCCTGGCCAAGCGCTCGGTCCTCAACAACCCCAGCAAACACATTATCATCGAGCGCTCCAACACTCGCTCCAGCCTGG
Seq A exon
CTGAGGTACAGAGTGAAATCGAGCGGATCTTCGAGCTGGCCCGGACCTTGCAGCTGGTTGCCCTGGACGCCGACACCATCAACCACCCAGCCCAGCTCTCTAAAACCTCGCTGGCCCCCATCATTGTTTACATCAAGATCACATCCCCCAAG
Seq C2 exon
GTACTGCAGAGGCTCATCAAATCCCGAGGGAAGTCTCAATCCAAACACCTCAATGTCCAAATAGCAGCCTCGGAGAAGCTGGCACAGTGTCCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004518-'25-15,'25-13,26-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.4=100)
A:
PF0062516=Guanylate_kin=FE(27.6=100)
C2:
PF0062516=Guanylate_kin=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTCCATCACCCGGGTAACG
R:
GGACACTGTGCCAGCTTCTC
Band lengths:
202-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]