DreEX6038410 @ danRer10
Exon Skipping
Gene
ENSDARG00000016939 | itgb2
Description
integrin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-110411-4]
Coordinates
chr9:45168008-45168980:-
Coord C1 exon
chr9:45168825-45168980
Coord A exon
chr9:45168176-45168271
Coord C2 exon
chr9:45168008-45168097
Length
96 bp
Sequences
Splice sites
3' ss Seq
TATATGATTTATGTTTTCAGGAC
3' ss Score
8.92
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AAAGAGATTGGTTGGGGAAACAGCACCCGGCTGCTGGTGTTGGCCACTGATGACGGCTTCCACATGGCAGGAGATGGAAAACTCGCTGCCATTCTGGAACCAAACAAAGAAACCTGTCAGCTGGACAAAAACAAGTACAGCAAGAGCAACATATGG
Seq A exon
GACTACCCATCTGTTGGACAGGTTGCTCGCAAACTGGAGGAGCAAAACATACAACCAATTTTTGCAGTGACAAAAAAAATGGAAACTGTTTACACA
Seq C2 exon
GAGCTGAGCAAACTAATCCCCAAATCTGCAGTCGGAGTCCTTTCTGAAGACTCCAACAATGTTGTCAACCTAATTGTGGAAGCATACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016939-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(12.2=100),PF135191=VWA_2=FE(22.7=100)
A:
PF0036213=Integrin_beta=FE(7.4=100),PF135191=VWA_2=FE(13.8=100)
C2:
PF0036213=Integrin_beta=FE(6.9=100),PF135191=VWA_2=PD(8.9=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGTTGGCCACTGATGAC
R:
TCAGAAAGGACTCCGACTGCA
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]