RnoEX0045171 @ rn6
Exon Skipping
Gene
ENSRNOG00000010966 | Itgb1
Description
integrin subunit beta 1 [Source:RGD Symbol;Acc:2927]
Coordinates
chr19:61708644-61710148:+
Coord C1 exon
chr19:61708644-61708799
Coord A exon
chr19:61709702-61709797
Coord C2 exon
chr19:61710059-61710148
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTATTACTTGATTCCTTAGGAT
3' ss Score
8.66
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TCGCTGATTGGCTGGAGGAATGTAACACGACTGCTGGTGTTTTCCACGGATGCTGGGTTTCACTTTGCTGGAGATGGGAAACTTGGTGGTATTGTTTTACCCAATGATGGCCAGTGTCACCTGGAAAATAATGTGTATACAATGAGCCATTACTAT
Seq A exon
GATTATCCTTCAATTGCTCACCTTGTTCAGAAACTAAGTGAAAATAATATTCAGACGATTTTTGCAGTCACTGAAGAGTTCCAGCCTGTTTACAAG
Seq C2 exon
GAATTGAAGAATTTGATTCCTAAGTCAGCAGTGGGCACACTGTCTGGAAACTCTAGTAATGTGATACAGCTGATTATCGATGCCTACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010966-'12-10,'12-9,13-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(11.8=100)
A:
PF0036213=Integrin_beta=FE(7.2=100)
C2:
PF0036213=Integrin_beta=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGTTTTCCACGGATGCT
R:
GAGTTTCCAGACAGTGTGCCC
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]