DreEX6093678 @ danRer10
Exon Skipping
Gene
ENSDARG00000071863 | itgb1a
Description
integrin, beta 1a [Source:ZFIN;Acc:ZDB-GENE-060803-2]
Coordinates
chr24:1130344-1132072:-
Coord C1 exon
chr24:1131917-1132072
Coord A exon
chr24:1130852-1130947
Coord C2 exon
chr24:1130344-1130433
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCCTCTCTCGACTAGGAT
3' ss Score
9.85
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GAGCACATTGGCTGGAGAAACGTCACCCGTTTGTTGGTTTTCTCTACTGACGCAGGTTTTCATTTTGCTGGAGATGGGAAACTCGGAGGAATTGTGCTTCCCAATGATGGGAGGTGTCACTTAGAAAATGACATGTACACCATGAGCCATTATTAC
Seq A exon
GATTACCCCTCGATCGCCCACTTGGTTCAGAAACTGAGTGAAAACAACATCCAGACCATCTTCGCTGTTACAGAAGAGTTTCAGCCTGTATATAAA
Seq C2 exon
GAACTCAAAAATCTGATTCCAAAGTCTGCAGTCGGCACGCTTTCAGCAAACTCCAGCAACGTTATCAATCTCATTGTTGATGCTTATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071863-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(11.8=100)
A:
PF0036213=Integrin_beta=FE(7.2=100)
C2:
PF0036213=Integrin_beta=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCACCCGTTTGTTGGTTTT
R:
GCCGACTGCAGACTTTGGAAT
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]