GgaEX6018541 @ galGal4
Exon Skipping
Gene
ENSGALG00000007145 | ITGB1
Description
integrin beta-1 precursor [Source:RefSeq peptide;Acc:NP_001034343]
Coordinates
chr2:13998682-14001037:+
Coord C1 exon
chr2:13998682-13998837
Coord A exon
chr2:13999993-14000088
Coord C2 exon
chr2:14000948-14001037
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTTAATTTAAACAGGAT
3' ss Score
7.6
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GACCAGATTGGATGGAGAAATGTTACACGGCTGTTGGTGTTTTCCACGGATGCTGGATTTCACTTTGCAGGAGATGGTAAACTTGGTGGAATTGTTTTACCAAATGATGGGAAATGTCACCTGGAAAATAATATGTACACAATGAGCCACTATTAC
Seq A exon
GATTATCCCTCTATTGCTCATCTGGTACAGAAGCTTAGTGAGAACAATATTCAGACAATTTTTGCTGTTACTGAGGAGTTTCAGGCAGTTTATAAG
Seq C2 exon
GAACTGAAAAACCTGATACCAAAATCAGCAGTGGGAACGTTGTCTTCCAATTCCAGCAATGTCATTCAGTTGATCATTGATGCATACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007145-'13-15,'13-12,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(11.8=100)
A:
PF0036213=Integrin_beta=FE(7.2=100)
C2:
PF0036213=Integrin_beta=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTGTTTTCCACGGATGCT
R:
AAGACAACGTTCCCACTGCTG
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]