DreEX6038502 @ danRer10
Exon Skipping
Gene
ENSDARG00000056128 | fastkd1
Description
FAST kinase domains 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1833]
Coordinates
chr9:48557655-48560946:+
Coord C1 exon
chr9:48557655-48557769
Coord A exon
chr9:48557856-48557984
Coord C2 exon
chr9:48560815-48560946
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGCCCAATCAAACAGGCT
3' ss Score
5.85
5' ss Seq
AGAGTATGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
ATTCATTACTCTGATGCATATATCACACTGCTGCCTTATGCTATACTAAACTACGACCCACCAATGGTAGAGGAGTTTTTTGATGCGTGTATTCAACATATCACTCCATATATTG
Seq A exon
GCTCCTTTGACCCTCACCTGCTGGTTCTGATGGCTCACGCATTGGCGATGGCTGATTACTTTCCAGAGGAGATGATCCGAGAAATATTCAGCGTTGACTTTCTAGCGAAGTTGGATGCCCATCTTGAGA
Seq C2 exon
CCTTTCCAGAGTCTCAGAACCTGTACATCCGTCTCCGCCTCATGCAGCTGAACCGCGCCGTGTGTCTGGAGTGTCCAGAGTTTCATGTGCCATGGTTTCATGAGCGTTACTGTCAACAGCTGCAGAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056128-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0674310=FAST_1=PU(45.7=82.1)
A:
PF0674310=FAST_1=PD(52.9=84.1)
C2:
PF083687=FAST_2=PU(40.9=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTCTGATGCATATATCACACTGC
R:
CTCTCTTCTGCAGCTGTTGACA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]