GgaEX0014548 @ galGal3
Exon Skipping
Gene
ENSGALG00000009841 | FASTKD1
Description
NA
Coordinates
chr7:20116091-20117672:+
Coord C1 exon
chr7:20116091-20116205
Coord A exon
chr7:20116683-20116811
Coord C2 exon
chr7:20117541-20117672
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTTTGTTTGCAAAGGTT
3' ss Score
7.57
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATCCACCCACTGGAAATGTATTTCATTCTCCATCTTTTCTCTGTTCTGAACTATGATCCTCCTGCCAATGAAGAGTTCTTTCAGAGTTGTATCCAACATCTGACTTCTAACTTGA
Seq A exon
GTTGTTTTGAAACTCATCACTTGGTGCTGCTGGGTTATATTTTGGCAGTGGCTGGCTATTTTCCTCCAGCTCTCATAAGGACAATATTTGATGTTTCTTTCTTAAGCAGATTGGATGCTCAGCTTGAAG
Seq C2 exon
TCCTGTCTGATACCTTAAGGCAGAGGGTCCGCTCACGGCTTATGAAACTGAACAGAGCAGTCTGTCTGGAATGTCCGGAGTTTCACATCCCTTGGTTTCATGAGCAGTATTTCCAGCGTGTCTTGTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009841-'11-10,'11-8,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0674310=FAST_1=PU(46.5=84.6)
A:
PF0674310=FAST_1=PD(52.1=84.1)
C2:
PF083687=FAST_2=PU(40.9=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCACTGGAAATGTATTTCA
R:
CTTTACACAAGACACGCTGGA
Band lengths:
245-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]