HsaEX0024945 @ hg19
Exon Skipping
Gene
ENSG00000138399 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:26150]
Coordinates
chr2:170393737-170401345:-
Coord C1 exon
chr2:170401231-170401345
Coord A exon
chr2:170396561-170396689
Coord C2 exon
chr2:170393737-170393850
Length
129 bp
Sequences
Splice sites
3' ss Seq
AAATCTTAATTTTCTTTTAGGTA
3' ss Score
8.65
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
ATCCATCCTTTTACAATCCCTGCTATTATTCGTCCATTCAGCGTATTGAACTATGATCCACCTCAAAGGGATGAATTTTTGGGAACTTGCGTGCAACATCTTAATTCTTACTTAG
Seq A exon
GTATATTGGATCCTTTTATATTAGTGTTTCTTGGTTTCTCTTTGGCCACACTTGAATATTTTCCAGAAGATCTGCTAAAGGCAATTTTTAACATCAAATTCTTAGCTAGATTGGATTCTCAACTTGAAA
Seq C2 exon
GTATTGGTGGCATGGATGGAACACAACAGCAGATTTTTAAAATGTTAGCAGAGGTACTAGGAGGAATCAATTGTGTAAAAGCCTCGGTTCTTACGCCTTATTACCACAAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138399_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0674310=FAST_1=PU(46.5=84.6)
A:
PF0674310=FAST_1=PD(52.1=84.1),PF083687=FAST_2=PU(40.2=79.5)
C2:
PF083687=FAST_2=FE(43.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCCTTTTACAATCCCTGCT
R:
ACTTTGTGGTAATAAGGCGTAAGA
Band lengths:
226-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)