DreEX6039484 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9355071-9362794:+
Coord C1 exon
chr16:9355071-9355274
Coord A exon
chr16:9359754-9359969
Coord C2 exon
chr16:9362582-9362794
Length
216 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTCTTTGTCTGCAGGGT
3' ss Score
12.56
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGTGTGTCCTGGAACACTGTACGATATATGATCGGTGAGATCCAGTATGGGGGTAGAGTGACCGATGACTATGACAAGCGCCTCTTGAACACATTTGCAAAGGTGTGGTTCAGTGAGAACATGTTCAGCCCTGATTTTCACTTCTACAAAGGCTACAGCATTCCTAAATGCAGTAATGTGGACCAGTACCTCCAATACATCCAG
Seq A exon
GGTCTCCCAACATATGACACCCCTGAGGTATTTGGCCTCCACCCAAACGCAGACATCACTTACCAAAGCAAACTTGCCAAGGACGTGCTAGACACAATCCTGAGTATCCAACCAAAGGACAGCTCTACTGGAGGTGGGGAGACCAGGGAGGCCATTGTGGGTCGGCTAGCTGATGACATGTTGGAGAAACTGCCTCCAGATTTTGTTCCATTTGAG
Seq C2 exon
GTTAGAGAGAGACTGATGAGCATGGGTCCCCTTCAGCCCATGAACATATTTCTGCGGCAGGAGATTGATCGCATGCAGAGAGTTATTGTTCTGGTCAGGAACACGCTGAATGACCTGAAGCTTGCCATTGATGGAACCATCATTATGAGCGAGAACCTGCGAGATGCACTGGACTGCATGTACGATGCCCGGATACCTGCACGCTGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'47-47,'47-46,48-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(11.6=100)
A:
PF0302810=Dynein_heavy=FE(10.2=100)
C2:
PF0302810=Dynein_heavy=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGATGACTATGACAAGCGC
R:
TCTCGCAGGTTCTCGCTCATA
Band lengths:
308-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]