GgaEX6020553 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78608801-78612021:+
Coord C1 exon
chr2:78608801-78609004
Coord A exon
chr2:78609541-78609756
Coord C2 exon
chr2:78611809-78612021
Length
216 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTTCACTTTGTAGAGT
3' ss Score
9.18
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GGGATTTCCTGGAGTACTGTTTGTTACATGATAGGTGAAATCCAGTATGGTGGCCGTGTGACAGATGACTATGACAAAAGGCTGATGAACACCTTTGTTAAGGTCTGGTTCAGTGAAAAAATGTTCAGTCAAGAATTCTGCTTCTACAAAGGATATGGCATACCCAAATGTACTATGGTGGATCAATACCTTCAGTACATACAG
Seq A exon
AGTCTTCCTGCTTATGACACACCAGAGGTATTTGGTTTGCACCCCAATGCTGATATCACTTACGAAAGTAAACTTTCCAAAGACATATTGGACATCATCCTCAGTATTCAGCCAAAGGACAGCTCTGGTGGAGGAGGTGAAACCCGAGAGATAGTTGTAGCCAGACTAGCTGATGATATGCTGGAAAAGCTTCCTGCTGATTATGTACCATTTGAA
Seq C2 exon
GTAAAAGAGAAACTGAAGAATATGGGACCTTTTCAGCCTATGAACATATTTTTGCGACAGGAGATTCAACAAATGCAGAGAGTTATTTCATTAGTAAGAAGCACTCTGACTGATCTAAAACTTGCCATTGATGGTACAATTGTTATGAGTGAAAACCTGAGGGATGCTTTAGACTGCATGTATGATGGGAGGATTCCTGCGAGCTGGAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'79-83,'79-82,80-83=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.6=100)
A:
PF0302810=Dynein_heavy=FE(10.2=100)
C2:
PF0302810=Dynein_heavy=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAAAAGGCTGATGAACACCT
R:
GCATCCCTCAGGTTTTCACTCA
Band lengths:
300-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]