DreEX6040088 @ danRer10
Exon Skipping
Gene
ENSDARG00000040869 | upp1
Description
uridine phosphorylase 1 [Source:ZFIN;Acc:ZDB-GENE-050306-2]
Coordinates
chr16:16302728-16303912:-
Coord C1 exon
chr16:16303801-16303912
Coord A exon
chr16:16303553-16303711
Coord C2 exon
chr16:16302728-16302842
Length
159 bp
Sequences
Splice sites
3' ss Seq
GGATGTACGTTTTGTCTCAGTTT
3' ss Score
3.85
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GTCAATATATGTAAACAATCCACACTTGGACTCTATGACAGATGACATTCTTTACCATTTTAACTTGGGAACATCCACTCATGATTTGCCAAAGATGTTTGGGGATGTCAAA
Seq A exon
TTTGTGTGTGTAGGGGGAAGTCCATGGAGGATGAAATCTTTCACTGAATACATTGCCAAAGAACTGGGACTGGTGGACCCCAATGCAGAATACCCAAATATATGTGCAGGAACTGATCGTTATGCCATGTACAAAGTGGGACCTGTGTTGTCTGTCAGT
Seq C2 exon
CATGGCATGGGCATTCCTTCAATCTCTATAATGCTACATGAGCTCATCAAGCTGCTGTATCATGCTCGCTGCACTGATGTCACCGTAGTGCGCATTGGAACTTCAGGTGGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040869-'2-6,'2-5,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
A:
PF0104815=PNP_UDP_1=FE(29.1=100)
C2:
PF0104815=PNP_UDP_1=FE(21.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACTTGGACTCTATGACAGA
R:
TCCACCTGAAGTTCCAATGCG
Band lengths:
203-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]