GgaEX0019744 @ galGal4
Exon Skipping
Gene
ENSGALG00000013073 | UPP1
Description
uridine phosphorylase 1 [Source:HGNC Symbol;Acc:HGNC:12576]
Coordinates
chr2:79904762-79906673:+
Coord C1 exon
chr2:79904762-79904879
Coord A exon
chr2:79905351-79905509
Coord C2 exon
chr2:79906559-79906673
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTGAACACCATCTGCACCAGTTT
3' ss Score
1.02
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AGAAAATTCTATCCATCTGTGCAACCCTCACCTGGAAAAAATGAAAGAAGACATCCTATACCATTTTGCTCTTGGGACCGGTACCCATGATTTTCCTGCACTGTTTGGAGATGTAAAG
Seq A exon
TTTGTGTGTGTAGGAGGAAGTCCTTCACGGATGAAAGCTTTTATTGCCTACATAGCTGAAGAACTTGGACTTGGGAGCTCTGGTGGTGACTACCCCAACATCTGTGCGGGAACTGACCGTTACGCCATGTACAAAGTGGGACCCGTTCTGTCAGTCAGT
Seq C2 exon
CACGGTATGGGCATTCCTTCTATTTCAATCATGTTGCACGAGCTGATCAAACTGTTGTATCATGCCAAGTGTTCCAACATAACCATTATTCGCATTGGCACCTCGGGTGGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013073-'9-8,'9-5,10-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
A:
PF0104815=PNP_UDP_1=FE(20.7=100)
C2:
PF0104815=PNP_UDP_1=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTATCCATCTGTGCAACCCT
R:
CCGAGGTGCCAATGCGAATAA
Band lengths:
218-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]