GgaEX0019744 @ galGal3
Exon Skipping
Gene
ENSGALG00000013073 | UPP1
Description
NA
Coordinates
chr2:82225065-82226976:+
Coord C1 exon
chr2:82225065-82225182
Coord A exon
chr2:82225654-82225812
Coord C2 exon
chr2:82226862-82226976
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTGAACACCATCTGCACCAGTTT
3' ss Score
1.02
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AGAAAATTCTATCCATCTGTGCAACCCTCACCTGGAAAAAATGAAAGAAGACATCCTATACCATTTTGCTCTTGGGACCGGTACCCATGATTTTCCTGCACTGTTTGGAGATGTAAAG
Seq A exon
TTTGTGTGTGTAGGAGGAAGTCCTTCACGGATGAAAGCTTTTATTGCCTACATAGCTGAAGAACTTGGACTTGGGAGCTCTGGTGGTGACTACCCCAACATCTGTGCGGGAACTGACCGTTACGCCATGTACAAAGTGGGACCCGTTCTGTCAGTCAGT
Seq C2 exon
CACGGTATGGGCATTCCTTCTATTTCAATCATGTTGCACGAGCTGATCAAACTGTTGTATCATGCCAAGTGTTCCAACATAACCATTATTCGCATTGGCACCTCGGGTGGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013073-'6-4,'6-2,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
A:
PF0104815=PNP_UDP_1=FE(20.7=100)
C2:
PF0104815=PNP_UDP_1=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTATCCATCTGTGCAACCCT
R:
CCGAGGTGCCAATGCGAATAA
Band lengths:
218-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]