DreEX6040166 @ danRer10
Exon Skipping
Gene
ENSDARG00000037550 | cyp21a2
Description
cytochrome P450, family 21, subfamily A, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-070103-6]
Coordinates
chr16:16709400-16710753:-
Coord C1 exon
chr16:16710575-16710753
Coord A exon
chr16:16709642-16709731
Coord C2 exon
chr16:16709400-16709554
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTTTGTCTGCTTGTTTGCAGCTA
3' ss Score
8.56
5' ss Seq
CCGGTATTT
5' ss Score
4.59
Exon sequences
Seq C1 exon
ACTCCTGCATTCACTCTATAAGCTCTTCTTCAGTACCGTTTCTCCAACTATTTCTGGTCCTCGCTCTCTCCCTTTGCTGGGAAACATGCTGGATCTCGCCCAAGATCATCTGCCCATCCACTTGACTGCATTGGCAAAATGCTATGGAAATATTTATCGGCTTAACTGTGGCAGCACAA
Seq A exon
CTATGGTTGTTTTAAACAACAGTGAGATTATCCGTGAGGCTCTAGTTAAGAAATGGTCTGACTTTGCTGGGAGGCCTCATTCATACACCG
Seq C2 exon
GTGATATAGTGTCTAGAGGAGGACGAACCATTTCTTTGGGTGATTTCAGTGAGGAATGGAAAGCTCATAGACGTGTCACCCACAGTGCTCTGCAGCGCTGCACCACTGACTCCCTGCACTCTGTCATAGAAAAGCAAGCACAACATCTCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037550-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(9.5=70.5)
A:
PF0006717=p450=FE(6.6=100)
C2:
PF0006717=p450=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGGATCTCGCCCAAGAT
R:
TGGGTGACACGTCTATGAGCT
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]