HsaEX1010847 @ hg38
Exon Skipping
Gene
ENSG00000231852 | CYP21A2
Description
cytochrome P450 family 21 subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:2600]
Coordinates
chr6:32007013-32039647:+
Coord C1 exon
chr6:32007013-32007099
Coord A exon
chr6:32038722-32038811
Coord C2 exon
chr6:32039546-32039647
Length
90 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTGGCTGTCTCCCAGATG
3' ss Score
8.37
5' ss Seq
CCTGTAAGG
5' ss Score
4.84
Exon sequences
Seq C1 exon
TTCTTCCCCAATCCAGGTCTCCGGAGGCTGAAGCAGGCCATAGAGAAGAGGGACCACAACGAGGAGAAGCAGCTGAGGCAGCACAAG
Seq A exon
ATGTGGTGGTGCTGAACTCCAAGAGGACCATTGAGGAAGCCATGGTCAAAAAGTGGGCAGACTTTGCTGGCAGACCTGAGCCACTTACCT
Seq C2 exon
GACGACAACTTAATGCCTGCCTATTACAAATGTATCCAGGAGGTGTTAAAAACCTGGAGCCACTGGTCCATCCAAATTGTGGACGTGATTCCCTTTCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231852_MULTIEX1-5/10=1-8
Average complexity
C3
Mappability confidence:
87%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=FE(37.5=100)
C2:
PF0006717=p450=FE(7.3=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCCCAATCCAGGTCTCC
R:
GAAAGGGAATCACGTCCACAA
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains