MmuEX0013318 @ mm9
Exon Skipping
Gene
ENSMUSG00000024365 | Cyp21a1
Description
cytochrome P450, family 21, subfamily a, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88591]
Coordinates
chr17:34940494-34941506:-
Coord C1 exon
chr17:34941143-34941506
Coord A exon
chr17:34940989-34941078
Coord C2 exon
chr17:34940494-34940636
Length
90 bp
Sequences
Splice sites
3' ss Seq
ACATTGTCCTTTCCCCTCAGATG
3' ss Score
11.82
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
AGATTCTCCAAGGCTGATGGGGACTGTGCCAATGTGAAAACATACTGTTCTGTGTTGGGAACAGGAAGGGACCTGAAGCAAAGGTCAGAGCCACAGCAGAACAAAGGACTGGAGTTGGGGGCTATAAAAGGCCATATCAGGGCCCTGCACAAGTGCTGGGCCATGCTGCTACCTGGGCTGCTGCTGCTGTTGCTGCTGCTAGCTGGCACCCGCTGGCTGTGGGGCCAATGGAAGCTCCGGAAGCTGCACCTCCCGCCTCTGGCCCCGGGTTTTCTGCACTTCCTACAGCCTAACCTTCCCATCTACCTGCTTGGCCTCACTCAGAAACTCGGGCCCATCTACAGGATCCGCTTGGGGATGCAAG
Seq A exon
ATGTGGTGGTGCTAAATTCTAACAGAACCATTGAGGAGGCCTTGATCCAAAAGTGGGTGGACTTTGCTGGCCGACCCCATATGCTAAATG
Seq C2 exon
GAAAGATGGACTTGGACCTGTCCCTGGGGGATTACTCTCTCATGTGGAAGGCCCACAAGAAACTCTCTCGCTCAGCCCTGATGCTGGGCATGCGAGACTCCATGGAGCCTCTGATAGAGCAGCTGACCCAGGAGTTCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024365-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(8.8=57.4)
A:
PF0006717=p450=FE(6.7=100)
C2:
PF0006717=p450=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACTCGGGCCCATCTACA
R:
TCCTGGGTCAGCTGCTCTATC
Band lengths:
175-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: