MmuINT0044699 @ mm9
Intron Retention
Gene
ENSMUSG00000024365 | Cyp21a1
Description
cytochrome P450, family 21, subfamily a, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88591]
Coordinates
chr17:34940989-34941371:-
Coord C1 exon
chr17:34941143-34941371
Coord A exon
chr17:34941079-34941142
Coord C2 exon
chr17:34940989-34941078
Length
64 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
ACATTGTCCTTTCCCCTCAGATG
3' ss Score
11.82
Exon sequences
Seq C1 exon
ATCAGGGCCCTGCACAAGTGCTGGGCCATGCTGCTACCTGGGCTGCTGCTGCTGTTGCTGCTGCTAGCTGGCACCCGCTGGCTGTGGGGCCAATGGAAGCTCCGGAAGCTGCACCTCCCGCCTCTGGCCCCGGGTTTTCTGCACTTCCTACAGCCTAACCTTCCCATCTACCTGCTTGGCCTCACTCAGAAACTCGGGCCCATCTACAGGATCCGCTTGGGGATGCAAG
Seq A exon
GTAAGCCAGTCTTCTGTGTTGATGTGACCCCTCTTCCCTGCCTGACATTGTCCTTTCCCCTCAG
Seq C2 exon
ATGTGGTGGTGCTAAATTCTAACAGAACCATTGAGGAGGCCTTGATCCAAAAGTGGGTGGACTTTGCTGGCCGACCCCATATGCTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024365-Cyp21a1:NM_009995:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(8.8=57.4)
A:
NA
C2:
PF0006717=p450=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTACCTGCTTGGCCTCACT
R:
CCAGCAAAGTCCACCCACTTT
Band lengths:
134-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: