MmuINT0044699 @ mm10
Intron Retention
Gene
ENSMUSG00000024365 | Cyp21a1
Description
cytochrome P450, family 21, subfamily a, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88591]
Coordinates
chr17:34804044-34804561:-
Coord C1 exon
chr17:34804198-34804561
Coord A exon
chr17:34804134-34804197
Coord C2 exon
chr17:34804044-34804133
Length
64 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
ACATTGTCCTTTCCCCTCAGATG
3' ss Score
11.82
Exon sequences
Seq C1 exon
AGATTCTCCAAGGCTGATGGGGACTGTGCCAATGTGAAAACATACTGTTCTGTGTTGGGAACAGGAAGGGACCTGAAGCAAAGGTCAGAGCCACAGCAGAACAAAGGACTGGAGTTGGGGGCTATAAAAGGCCATATCAGGGCCCTGCACAAGTGCTGGGCCATGCTGCTACCTGGGCTGCTGCTGCTGTTGCTGCTGCTAGCTGGCACCCGCTGGCTGTGGGGCCAATGGAAGCTCCGGAAGCTGCACCTCCCGCCTCTGGCCCCGGGTTTTCTGCACTTCCTACAGCCTAACCTTCCCATCTACCTGCTTGGCCTCACTCAGAAACTCGGGCCCATCTACAGGATCCGCTTGGGGATGCAAG
Seq A exon
GTAAGCCAGTCTTCTGTGTTGATGTGACCCCTCTTCCCTGCCTGACATTGTCCTTTCCCCTCAG
Seq C2 exon
ATGTGGTGGTGCTAAATTCTAACAGAACCATTGAGGAGGCCTTGATCCAAAAGTGGGTGGACTTTGCTGGCCGACCCCATATGCTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024365:ENSMUST00000025223:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(8.8=57.4)
A:
NA
C2:
PF0006717=p450=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTACCTGCTTGGCCTCACT
R:
CCAGCAAAGTCCACCCACTTT
Band lengths:
134-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types